辣椒GST基因家族鉴定、进化及表达分析
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淮阴工学院生命科学与食品工程学院

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国家自然科学基金项目(31902021)


Identification, evolution and expression analysis of the GST gene family in pepper
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    摘要:

    【目的】GST基因在植物生长发育过程和抵抗非生物胁迫中扮演着重要角色,探究辣椒CaGSTs的基本特性和表达模式,将为辣椒CaGST基因功能深入研究及蔬菜分子抗逆育种提供理论依据和基因资源。【方法】利用生物信息学方法鉴定辣椒GST基因家族,分析其染色体定位、基因结构、理化性质、进化关系和在不同组织、不同果实发育阶段中的表达特征等,利用RT-qPCR技术分析其在不同非生物胁迫下的表达模式。【结果】在辣椒“CM334”基因组中共鉴定到72个辣椒GST成员,随机分布在10条染色体上,其中9号染色体上分布最多;可分为10个亚家族,组间基因结构显著差异,串联复制是该基因家族扩张的主要原因;CaGST的表达具有组织特异性,其中CaGSTZ1在果皮和胎座发育后期高表达;非生物胁迫下,GaGSTU14、CaMGST1、CaTCHQD1和CaGSTF3分别对低温、高温、盐和干旱有显著响应。【结论】CaGSTZ1在果实PCR发育阶段起到重要作用,CaGSTU14、CaGSTF3基因可能是辣椒抵抗高温低温的关键基因。

    Abstract:

    [Objective] The Glutathione S-transferase (GST) genes play a critical role in plant growth and development as well as abiotic stress responses. Exploring the basic characteristics and expression patterns of CaGSTs will provide genetic resources and references for in-depth research on the gene function of CaGST in peppers and molecular stress resistance breeding of vegetables. [Methods] The GST gene family was analyzed with the bioinformatics methods in genome of pepper, and the physical and chemical properties of protein, the gene structure, chromosome localization and evolutionary relationship were determined. Transcriptome data were utilized to examine the expression characteristics of GST genes in various tissues and fruits during varying developmental stages. The expression profiles were also analyzed under variant abiotic stresses using RT-qPCR. [Results] 72 GST members were identified in the whole genome of "CM334" pepper, randomly distributed on 10 chromosomes, with the highest distribution on chromosome 9. Evolutionary analysis showed that CaGST was categorized into 10 subfamilies, with significant differences in gene structure between groups, and tandem duplication caused the expansion of this gene family. Expression analysis showed that CaGST was tissue specific, in which CaGSTZ1 was highly expressed in the late stage of pericarp and placenta development. Under abiotic stress, GaGSTU14, CaMGST1, CaTCHQD1 and CaGSTF3 responded significantly to low temperature, high temperature, salt and drought, respectively. [Conclusion] CaGSTZ1 plays an important role in fruit development, and CaGSTU14 and CaGSTF3 genes may be the key genes for pepper to resist high and low temperatures.

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历史
  • 收稿日期:2024-09-13
  • 最后修改日期:2024-10-17
  • 录用日期:2024-11-04
  • 在线发布日期: 2024-12-24
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