龙眼WOX家族基因鉴定及在体胚发生早期的表达分析
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国家自然科学基金(31672127);


Identification of WOX Gene Family and Their Expression Analysis during Early Somatic Embryogenesis in Dimocarpus longan
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    摘要:

    为探究龙眼WUSCHEL相关的同源异型盒(WUSCHELrelated homeobox, WOX)家族基因的生物学功能与表达模式,该研究基于龙眼全基因组数据库对DlWOX家族成员进行鉴定与生物信息学分析,并利用实时荧光定量 PCR(qRTPCR)技术检测验证其在龙眼体胚发生早期三个阶段以及在不同激素处理下的表达模式。结果表明:(1)共筛选出13个龙眼DlWOX家族成员,均为不稳定蛋白;亚细胞定位预测显示DlWOX定位于细胞核与细胞骨架上;进化树分析发现,DlWOX家族分为远古支、中间支和WUS(WUSCHEL基因是WOX家族中最先发现的基因)支。(2)基因结构分析发现,DlWOX内含子数在0~19个之间,其大部分的编码蛋白都含有基序motif1与motif2,部分成员含有特异的基序;DlWOX启动子顺式作用元件包含大量光与激素响应元件。(3)对DlWOX在龙眼不同组织部位及体胚发生早期的表达模式分析发现,该家族部分成员在龙眼叶片中高表达,DlWOX14.1、DlWOX14.2和DlWOX9A在胚性愈伤组织阶段(EC)高表达;qRTPCR分析显示,大部分龙眼DlWOX家族成员响应茉莉酸甲酯(MeJA)和赤霉素(GA)的调控,除DlWOX6外,其余成员在GA与MeJA处理下均上调表达,其中DlWOX9A在GA和MEJA处理下表达量显著上调。研究发现,龙眼DlWOX9A转录组测序结果与qRTPCR结果的表达量存在差异并且趋势也不完全相同,推测WOX家族在龙眼的整个体胚发生早期起着重要的作用,尤其是在GE阶段;龙眼DlWOX基因在进化过程中存在高度的保守性,部分DlWOX家族成员可能通过响应GA与MeJA激素在龙眼体胚发生过程中发挥作用。

    Abstract:

    To understand the biological function and expression patterns of the longan WOX (DlWOX) family, we identified the members of DlWOX family, analyzed bioinformatics based on the longan genomewide database. With quantitative realtime PCR (qRTPCR) technology we detected and verified their expression patterns in the three early stages of somatic embryogenesis in longan and under different hormone treatments. The results showed that: (1) 13 longan DlWOX family members were screened, all of which are unstable proteins. The subcellular localization prediction results showed that DlWOX family members are localized on the nucleus and cytoskeleton. Phylogenetic tree analysis found that the DlWOX family is divided into ancient branches, middle branches and WUS (The WUSCHEL gene is the first gene discovered in the WOX family) branches. (2) Gene structure analysis revealed that DlWOX family members contained 0-19 number of introns, and most of their encoded proteins contained motif1 and motif2, and some members contain specific motifs. The cisacting elements of the DlWOX promoter contained a large number of light and hormone response elements. (3) Analysis of the expression patterns of DlWOX in different tissues of longan and early somatic embryogenesis revealed that some members of this family are highly expressed in the leaves, and DlWOX14.1, DlWOX14.2 and DlWOX9A were highly expressed in the embryogenic callus (EC) stage. QRTPCR analysis of DlWOX under different hormone treatments of longan EC showed that most of the DlWOX family members responded to the methyl jasmonate (MeJA) and gibberellin (GA) hormones. Except for DlWOX6, the remaining members were upregulated under the GA and MeJA treatments. Among them, the expression of DlWOX9A was significantly upregulated under the treatment of GA and MeJA. The study found that the expression levels of the longan DlWOX9A based on the transcriptome sequencing results and the qRTPCR results were different and the trends were not exactly the same. It was speculated that the WOX family plays an important role during the early somatic embryogenesis of longan, especially in the GE stage. The DlWOX genes were highly conserved during evolution. Some members of the DlWOX family may play a role during the somatic embryogenesis of longan by responding to GA and MeJA hormones.

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马湘玮,张舒婷,陈 燕,等.龙眼WOX家族基因鉴定及在体胚发生早期的表达分析[J].西北植物学报,2022,42(2):190-200

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  • 在线发布日期: 2022-03-23
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